Nature · 2023 · 145 citations · 62 references
MedicineCancer BiologyMolecular GeneticsCancer GeneticsMolecular OncologyTumor ProgressionCancer Cell SignalingCancer GenomicsCancer ProgressionMalignant NeoplasmsCancer Cell ApoptosisCancer Cell PlasticityOncogene ReactivationPersistent CellsTherapy-induced Evolution
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Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
STAR: ultrafast universal RNA-seq aligner
Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang, Tao Liu, Clifford A. Meyer et al. · Genome biology · 2008 · 19.9K citations · Full text
Fast and accurate long-read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2010 · 12.9K citations · Full text