Concepedia

WFA-FPGA: An efficient accelerator of the wavefront algorithm for short and long read genomics alignment

Abbas Haghi, Santiago Marco‐Sola, Lluc Alvarez, Dionysios Diamantopoulos, Christoph Hagleitner, Miquel Moretó

Future Generation Computer Systems · 2023 · 12 citations · 49 references

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Concepts

References

49

Basic local alignment search tool

Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 94.5K citations

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Minimap2: pairwise alignment for nucleotide sequences

Heng Li · Bioinformatics · 2018 · 16.8K citations · Full text

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A framework for variation discovery and genotyping using next-generation DNA sequencing data

Mark A. DePristo, Eric Banks, Ryan Poplin et al. · Nature Genetics · 2011 · 12.4K citations · Full text

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Identification of common molecular subsequences

Temple F. Smith, Michael S. Waterman · Journal of Molecular Biology · 1981 · 10.1K citations

, , +11

Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM

Heng Li · DROPS (Schloss Dagstuhl – Leibniz Center for Informatics) · 2013 · 5.3K citations · Full text

, , +17