Nature Communications · 2023 · 51 citations · 23 references
MedicineImmunologyOncologyCancer ImmunologyTumor ImmunologyTumor MicroenvironmentCancer ImmunotherapyGeographic Variation In CancerImmune Checkpoint RegulationImmune HeterogeneityMalignant NeoplasmsTumor Immune MicroenvironmentCellular DistributionClinicopathologic FeaturesDistance AnalysisImmune Cell Spatial DistributionImmune Inflamed TumorsImmunofluorescence AssaysImmunosuppressive MicroenvironmentSpatial Immunity Patterns
Studying the cellular geographic distribution in non-small cell lung cancer is essential to understand the roles of cell populations in this type of tumor. In this study, we characterize the spatial cellular distribution of immune cell populations using 23 makers placed in five multiplex immunofluorescence panels and their associations with clinicopathologic variables and outcomes. Our results demonstrate two cellular distribution patterns-an unmixed pattern mostly related to immunoprotective cells and a mixed pattern mostly related to immunosuppressive cells. Distance analysis shows that T-cells expressing immune checkpoints are closer to malignant cells than other cells. Combining the cellular distribution patterns with cellular distances, we can identify four groups related to inflamed and not-inflamed tumors. Cellular distribution patterns and distance are associated with survival in univariate and multivariable analyses. Spatial distribution is a tool to better understand the tumor microenvironment, predict outcomes, and may can help select therapeutic interventions.
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Dimensionality reduction for visualizing single-cell data using UMAP
Étienne Becht, Leland McInnes, John Healy et al. · Nature Biotechnology · 2018 · 5.8K citations
Hanjie Li, Anne M. van der Leun, Ido Yofe et al. · Cell · 2018 · 1.1K citations · Full text
Life Sciences, Immunology, Oncology +16