Microbiology Spectrum · 2022 · 18 citations · 66 references
Life SciencesInfectious DiseasesVeterinary MicrobiologyComparative GenomicsMolecular VirologyVirologyAnimal VirusesVeterinary VirologyViral EpidemiologyViral GeneticsViral GenomicsViral InfectionsCanine ParvovirusesCanine VirologyPhylogenetic Character AnalysisPhylogenetic Diversity AnalysisPositive SelectionViral Strain ClassificationViral Strain TypingVirus Genotypes
CPV-2 was the original virus strain identified in dogs, which cause an acute and lethal disease in dogs. Subsequently, the original CPV-2 was replaced throughout the world by novel antigenic variants (e.g., CPV-2a, CPV-2b, new CPV-2a, new CPV-2b, and CPV-2c). Currently, the epidemiological characteristics of CPV-2 in Henan province of China is still unclear. In our study, a total of 98 nearly full-length genomes of CPV-2 strains were obtained to explore prevalence and genetic evolution of CPV-2 in Henan Province. Moreover, the epidemiological and genetic evolution of CPV-2 in China since its discovery was also investigated. The results of this study will provide valuable information regarding the evolution of CPV-2 strains in China.
66
Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10
Marc A. Suchard, Philippe Lemey, Guy Baele et al. · Virus Evolution · 2018 · 4.1K citations · Full text
Using ggtree to Visualize Data on Tree‐Like Structures
Guangchuang Yu · Current Protocols in Bioinformatics · 2020 · 1.6K citations
TreeTime: Maximum-likelihood phylodynamic analysis
Pavel Sagulenko, Vadim Puller, Richard A. Neher · Virus Evolution · 2017 · 1.4K citations · Full text