Richard A. Neher

Nextstrain: real-time tracking of pathogen evolution

James Hadfield, Colin Megill, Sidney M. Bell et al. · Bioinformatics · 2018 · 3.3K citations · Full text

TreeTime: Maximum-likelihood phylodynamic analysis

Pavel Sagulenko, Vadim Puller, Richard A. Neher · Virus Evolution · 2017 · 1.3K citations · Full text

Phylogenetic Analysis, Phylogenetics, Molecular Ecology +17

Nextclade: clade assignment, mutation calling and quality control for viral genomes

Ivan Aksamentov, Cornelius Roemer, Emma B. Hodcroft et al. · The Journal of Open Source Software · 2021 · 1K citations · Full text

COVID-19 epidemic in Switzerland: on the importance of testing, contact tracing and isolation

Marcel Salathé, Christian L. Althaus, Richard A. Neher et al. · Swiss Medical Weekly · 2020 · 537 citations · Full text

World Health Organization, Virus Epidemiology, Covid-19 Epidemiology +17

Spread of a SARS-CoV-2 variant through Europe in the summer of 2020

Emma B. Hodcroft, Moira Zuber, Sarah Nadeau et al. · Nature · 2021 · 449 citations · Full text

Sars-cov-2 Variant, Virus Epidemiology, Covid-19 Pandemic +2