Concepedia

Nextstrain: real-time tracking of pathogen evolution

James Hadfield, Colin Megill, Sidney M. Bell, John Huddleston, Barney Potter, Charlton Callender, Pavel Sagulenko, Trevor Bedford, Richard A. Neher

Bioinformatics · 2018 · 3.3K citations · 8 references

DOIFull text

Open access

Abstract

All code (predominantly JavaScript and Python) is freely available from github.com/nextstrain and the web-application is available at nextstrain.org.

References

8

Real-time, portable genome sequencing for Ebola surveillance

Joshua Quick, Nicholas J. Loman, Sophie Duraffour et al. · Nature · 2016 · 1.5K citations · Full text

, , +6

TreeTime: Maximum-likelihood phylodynamic analysis

Pavel Sagulenko, Vadim Puller, Richard A. Neher · Virus Evolution · 2017 · 1.3K citations · Full text

, , +17

Epidemiology of Human Infections with Avian Influenza A(H7N9) Virus in China

Qun Li, Lei Zhou, Minghao Zhou et al. · New England Journal of Medicine · 2013 · 684 citations · Full text

Establishment and cryptic transmission of Zika virus in Brazil and the Americas

Nuno R. Faria, Josh Quick, Ingra Morales Claro et al. · Nature · 2017 · 657 citations · Full text

, , +5

nextflu: real-time tracking of seasonal influenza virus evolution in humans

Richard A. Neher, Trevor Bedford · Bioinformatics · 2015 · 168 citations · Full text