Methods in molecular biology · 2022 · 10 citations · 32 references
Life SciencesBioinformaticsGeneticsChromatin BiologyChromatin StructureEpigeneticsAllele-specific EpigenomicsChromatinChromatin ArchitectureChromatin InteractionsHistone ProteinsNucleosome StructureAllele-specific 3D Genome OrganizationAllele-specific Chromatin AccessibilityAllele-specific Chromatin InteractionsAllele-specific Chromatin State MappingAllele-specific Long-range Chromatin InteractionsCell Type-specific Chromatin InteractionsSingle-nucleus Epigenomics
32
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
Suhas S.P. Rao, Miriam Huntley, Neva C. Durand et al. · Cell · 2014 · 9.9K citations · Full text
Topological domains in mammalian genomes identified by analysis of chromatin interactions
Jesse R. Dixon, Siddarth Selvaraj, Feng Yue et al. · Nature · 2012 · 7.4K citations · Full text
Capturing Chromosome Conformation
Job Dekker, Karsten Rippe, Martijn Dekker et al. · Science · 2002 · 3.8K citations