Advances and challenges in cataloging the human gut virome

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct <i>de Bruijn</i> graph

Dinghua Li, Chi-Man Liu, Ruibang Luo et al. · Bioinformatics · 2015 · 10K citations · Full text

Life Sciences, Bioinformatics, Genome Assembly +11

metaSPAdes: a new versatile metagenomic assembler

Sergey Nurk, Dmitry Meleshko, Anton Korobeynikov et al. · Genome Research · 2017 · 4.8K citations · Full text

Life Sciences, Bioinformatics, Microbiology +12

CheckV assesses the quality and completeness of metagenome-assembled viral genomes

Stephen Nayfach, Antônio Pedro Camargo, Frederik Schulz et al. · Nature Biotechnology · 2020 · 1.8K citations · Full text

Life Sciences, Bioinformatics, Microbiology +17

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins

David Couvin, Aude Bernheim, Claire Toffano‐Nioche et al. · Nucleic Acids Research · 2018 · 1.6K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +14

A unified catalog of 204,938 reference genomes from the human gut microbiome

Alexandre Almeida, Stephen Nayfach, Miguel Boland et al. · Nature Biotechnology · 2020 · 1.4K citations · Full text

Life Sciences, Bioinformatics, Microbiology +17