Applied and Environmental Microbiology · 2022 · 10 citations · 30 references
Life SciencesInfectious DiseasesMicrobiologyAntimicrobial ResistanceMedical MicrobiologyMicrobial PathogenesisAntibacterial PharmacotherapyAntibiotic ResistanceAntibiotic Resistance MechanismsAntimicrobial Agent SelectionAntimicrobial Drug InteractionsDrug Interactions With AntimicrobialsAntibiotic CombinationsAntibiotic Regimen OptimizationAntibiotic Use OptimizationBacterial Infection TreatmentChronic Pseudomonas Aeruginosa InfectionPolymicrobial Interactions
Increasing evidence has demonstrated the polymicrobial characteristics of most chronic infections, and the frequent communications among bacterial pathogens result in many difficulties for clinical therapy. Exploring bacterial interspecific interaction during antibiotic treatment is an emerging endeavor that may facilitate the understanding of polymicrobial infections and the optimization of clinical therapies. Here, we investigated the interaction of cocultured P. aeruginosa and S. aureus with the intervention of commonly used antibiotics in clinic. We found that the application of subinhibitory concentrations of cefotaxime and levofloxacin can select P. aeruginosa in coculture with S. aureus by modulating P. aeruginosa QS regulation to enhance the production of antistaphylococcal metabolites in different ways. This study emphasizes the role of the QS system in the interaction of P. aeruginosa with other bacterial species and provides an explanation for the persistence and enrichment of P. aeruginosa in patients after antibiotic treatment and a reference for further clinical therapy.
30
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
HTSeq—a Python framework to work with high-throughput sequencing data
Simon Anders, Paul Theodor Pyl, Wolfgang Huber · Bioinformatics · 2014 · 22.7K citations · Full text
clusterProfiler 4.0: A universal enrichment tool for interpreting omics data
Tianzhi Wu, Erqiang Hu, Shuangbin Xu et al. · The Innovation · 2021 · 12.7K citations · Full text