iScience · 2022 · 13 citations · 54 references
Life SciencesCancer BiologyMolecular BiologyEpigeneticsProtein TranslationProteomicsPost-translational RegulationProtein SynthesisRibosome ProfilingTranslation ElongationTranslation RegulationTranslational RegulationCancer Proteome ProfilingHistone H1 BindingMtor Pathway DysregulationProteome-wide ProfilingRibosome Profiling Data AnalysisRibosome-nascent Chain InteractionsTranslation Elongation Factors
NPCs that characteristically exhibit protein N-terminus-biased positions. We applied pSNAP to evaluate the effect of silmitasertib, a potential molecular therapy for cancer, and revealed acute translational repression through casein kinase II and mTOR pathways. We also characterized modifications on NPCs and demonstrated that the combination of different types of modifications, such as acetylation and phosphorylation in the N-terminal region of histone H1.5, can modulate interactions with ribosome-associated factors. Thus, pSNAP provides a framework for dissecting co-translational regulations on a proteome-wide scale.
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Metascape provides a biologist-oriented resource for the analysis of systems-level datasets
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The Perseus computational platform for comprehensive analysis of (prote)omics data
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Global quantification of mammalian gene expression control
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Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment
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