Microbiology Spectrum · 2022 · 67 citations · 37 references
Life SciencesImmunologyMicrobiologyMicrobiome ResearchReproductive BiologyReproductive MedicineCytokines In ReproductionMicrobiome DiversityMicrobiome FunctionReproductive Tract InflammationAlpha DiversityBeta DiversityCervicovaginal MicrobiomeEndometrial MicrobiomeGut Microbiota CompositionMucosal MicrobiotaSpontaneous Abortion PathologyVaginal Microbiome Dysbiosis
As an obstacle to pregnancy, recurrent spontaneous abortion (RSA) can be caused by a variety of factors, and a current understanding of the etiology of RSA is still lacking; half of cases have an unknown cause. A substantial fraction of patients show no improvement after treatment. Since the microbiota of the female reproductive tract has been proposed as an emerging factor in RSA patients, further investigation is needed to provide guidance for clinical therapy. In general, this is the first report describing the distinct alterations of the vaginal, cervical, and uterine microbiota in RSA, not just that in the vagina. Furthermore, another major strength of this study derived from the further in-depth investigation and analysis of the characteristics of the microbiota colonizing the upper female genital tract in RSA, which provided a more comprehensive view for investigating the uterine microbiota.
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DADA2: High-resolution sample inference from Illumina amplicon data
Benjamin J. Callahan, Paul J. McMurdie, Michael Rosen et al. · Nature Methods · 2016 · 36.3K citations
Metagenomic biomarker discovery and explanation
Nicola Segata, Jacques Izard, Levi Waldron et al. · Genome biology · 2011 · 16.7K citations · Full text