Journal of Integrative Plant Biology · 2022 · 34 citations · 46 references
Life SciencesPlant BiologyPlant SciencesChromatin BiologyPhotosynthesisPlant Molecular BiologyChromatinEpigenetic Regulation In DevelopmentHistone ProteinsPlant Epigenetic RegulationPlant EpigeneticsPlant Transcriptional RegulationChlorophyll Biosynthesis Gene ExpressionHistone AcetylationHistone AcetyltransferasesHistone-lysine AcetylationPolycomb Group ProteinsPolycomb Group RegulationPolycomb Repressive Complex 1Regulatory Subunits
Although two Enhancer of Polycomb-like proteins, EPL1A and EPL1B (EPL1A/B), are known to be conserved and characteristic subunits of the NuA4-type histone acetyltransferase complex in Arabidopsis thaliana, the biological function of EPL1A/B and the mechanism by which EPL1A/B function in the complex remain unknown. Here, we report that EPL1A/B are required for the histone acetyltransferase activity of the NuA4 complex on the nucleosomal histone H4 in vitro and for the enrichment of histone H4K5 acetylation at thousands of protein-coding genes in vivo. Our results suggest that EPL1A/B are required for linking the NuA4 catalytic subunits HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 1(HAM1) and HAM2 with accessory subunits in the NuA4 complex. EPL1A/B function redundantly in regulating plant development especially in chlorophyll biosynthesis and de-etiolation. The EPL1A/B-dependent transcription and H4K5Ac are enriched at genes involved in chlorophyll biosynthesis and photosynthesis. We also find that EAF6, another characteristic subunit of the NuA4 complex, contributes to de-etiolation. These results suggest that the Arabidopsis NuA4 complex components function as a whole to mediate histone acetylation and transcriptional activation specifically at light-responsive genes and are critical for photomorphogenesis.
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Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
Daehwan Kim, Joseph M. Paggi, Chanhee Park et al. · Nature Biotechnology · 2019 · 15.7K citations · Full text
The structure of DNA in the nucleosome core
Timothy J. Richmond, Curt A. Davey · Nature · 2003 · 1.3K citations