Microbiome-wide association studies between phyllosphere microbiota and ionome highlight the beneficial symbiosis of Lactococcus lactis in alleviating aluminium in cassava

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct <i>de Bruijn</i> graph

Dinghua Li, Chi-Man Liu, Ruibang Luo et al. · Bioinformatics · 2015 · 10K citations · Full text

Life Sciences, Bioinformatics, Genome Assembly +11

GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database

Pierre-Alain Chaumeil, Aaron J. Mussig, Philip Hugenholtz et al. · Bioinformatics · 2019 · 5.5K citations · Full text

Life Sciences, Bioinformatics, Microbiology +17

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

Ivica Letunić, Peer Bork · Nucleic Acids Research · 2016 · 5.4K citations · Full text

Computing, Bioinformatics, Visualization +12

MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies

Dongwan Kang, Feng Li, Edward Kirton et al. · PeerJ · 2019 · 3.9K citations · Full text

Life Sciences, Bioinformatics, Microbiology +15

Species-level functional profiling of metagenomes and metatranscriptomes

Eric A. Franzosa, Lauren J. McIver, Luke Thompson et al. · Nature Methods · 2018 · 1.8K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +12