Concepedia

Application of the Metabolic Modeling Pipeline in KBase to Categorize Reactions, Predict Essential Genes, and Predict Pathways in an Isolate Genome

Benjamin Allen, Nidhi Gupta, Janaka N. Edirisinghe, José P. Faria, Christopher S. Henry

Methods in molecular biology · 2021 · 15 citations · 24 references

DOI

Concepts

References

24

The RAST Server: Rapid Annotations using Subsystems Technology

Ramy K. Aziz, Daniela Bartels, Aaron A. Best et al. · BMC Genomics · 2008 · 11.8K citations · Full text

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The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

Ross Overbeek, Robert Olson, Gordon D. Pusch et al. · Nucleic Acids Research · 2013 · 4.6K citations · Full text

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What is flux balance analysis?

Jeffrey D. Orth, Ines Thiele, Bernhard Ø. Palsson · Nature Biotechnology · 2010 · 4.1K citations

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A protocol for generating a high-quality genome-scale metabolic reconstruction

Ines Thiele, Bernhard Ø. Palsson · Nature Protocols · 2010 · 1.9K citations · Full text

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KBase: The United States Department of Energy Systems Biology Knowledgebase

Adam P. Arkin, Robert W. Cottingham, Christopher S. Henry et al. · Nature Biotechnology · 2018 · 1.7K citations · Full text

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