Concepedia
Microbiome · 2021 · 248 citations · 68 references
Open access
68
<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth · Bioinformatics · 2009 · 42.7K citations · Full text
UPARSE: highly accurate OTU sequences from microbial amplicon reads
R. C. Edgar · Nature Methods · 2013 · 16.7K citations
Long-read Sequencing, Accurate Otu Sequences, Sequence Analysis +5
UCHIME improves sensitivity and speed of chimera detection
R. C. Edgar, Brian J. Haas, José C. Clemente et al. · Bioinformatics · 2011 · 15.2K citations · Full text
ggplot2: Elegant Graphics for Data Analysis
Cedric E. Ginestet · Journal of the Royal Statistical Society Series A (Statistics in Society) · 2011 · 14.7K citations
Interactive Visualization, Engineering, Data Science +4
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
Morgan G. I. Langille, Jesse Zaneveld, J. Gregory Caporaso et al. · Nature Biotechnology · 2013 · 9K citations · Full text
Biology, Microbial Diversity, Functional Genomics +9