Improved protein structure prediction by deep learning irrespective of co-evolution information

Decoupled Weight Decay Regularization

Ilya Loshchilov, Frank Hutter · arXiv (Cornell University) · 2017 · 9K citations · Full text

Engineering, Machine Learning, Weight Decay +16

TM-align: a protein structure alignment algorithm based on the TM-score

Yang Zhang · Nucleic Acids Research · 2005 · 3.8K citations · Full text

5th International Conference on Learning Representations (ICLR 17)

Serhii Havrylov, Ivan Titov · 2017 · 3.5K citations

Artificial Intelligence, Engineering, Machine Learning +5

Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences

Alexander Rives, Joshua Meier, Tom Sercu et al. · Proceedings of the National Academy of Sciences · 2021 · 2.8K citations · Full text

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

Michael Remmert, A. Biegert, Andreas Hauser et al. · Nature Methods · 2011 · 2.4K citations

Hmm-hmm Alignment, Natural Sciences, Computational Biology +7