CoCoNet: an efficient deep learning tool for viral metagenome binning

Supplementary data are available at Bioinformatics online.

Page 1

	Year	Citations
Adam: A Method for Stochastic Optimization Diederik P. Kingma, Jimmy Ba UvA-DARE (University of Amsterdam) Artificial IntelligenceMathematical ProgrammingModel OptimizationMachine VisionMachine Learning	2014	84.5K
fastp: an ultra-fast all-in-one FASTQ preprocessor Shifu Chen, Yanqing Zhou, Yaru Chen, Bioinformatics	2018	27K
HTSeq—a Python framework to work with high-throughput sequencing data Simon Anders, Paul Theodor Pyl, Wolfgang Huber Bioinformatics	2014	21.9K
Minimap2: pairwise alignment for nucleotide sequences Heng Li Bioinformatics	2018	15.5K
Comparing partitions Lawrence J. Hubert, Phipps Arabie Journal of Classification	1985	7.4K
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation Nuala A. O’Leary, Matt W. Wright, J. Rodney Brister, Nucleic Acids Research	2015	6.8K
Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM Heng Li DROPS (Schloss Dagstuhl – Leibniz Center for Informatics) GeneticsMolecular BiologySequence ReadsGenomicsSequence Alignment	2013	5.2K
Finding community structure in networks using the eigenvectors of matrices M. E. J. Newman Physical Review E	2006	4.8K
From Louvain to Leiden: guaranteeing well-connected communities Scientific Reports	2019	4.7K
metaSPAdes: a new versatile metagenomic assembler Sergey Nurk, Dmitry Meleshko, Anton Korobeynikov, Genome Research Polymorphic Diploid GenomesSequence AssemblyLong-read SequencingEngineeringBiomolecular Tool	2017	4.5K

Page 1