PLoS Genetics · 2021 · 16 citations · 34 references
Life SciencesGeneticsMolecular BiologyEpigeneticsGene ExpressionMetabolismDna MethylationEpigenetic Regulation In DevelopmentGene Expression Responses To DietMetabolic Adaptation To ExerciseMetabolic Responses To ExerciseMuscle PhysiologyCellular Metabolic AdaptationDna MethyltransferasesEnergy Metabolism RegulationMuscle Development EpigeneticsMuscle Energy MetabolismSkeletal Muscle DifferentiationSkeletal Muscle Gene Expression ResponsesSkeletal Muscle Physiology
In response to physical exercise and diet, skeletal muscle adapts to energetic demands through large transcriptional changes. This remodelling is associated with changes in skeletal muscle DNA methylation which may participate in the metabolic adaptation to extracellular stimuli. Yet, the mechanisms by which muscle-borne DNA methylation machinery responds to diet and exercise and impacts muscle function are unknown. Here, we investigated the function of de novo DNA methylation in fully differentiated skeletal muscle. We generated muscle-specific DNA methyltransferase 3A (DNMT3A) knockout mice (mD3AKO) and investigated the impact of DNMT3A ablation on skeletal muscle DNA methylation, exercise capacity and energy metabolism. Loss of DNMT3A reduced DNA methylation in skeletal muscle over multiple genomic contexts and altered the transcription of genes known to be influenced by DNA methylation, but did not affect exercise capacity and whole-body energy metabolism compared to wild type mice. Loss of DNMT3A did not alter skeletal muscle mitochondrial function or the transcriptional response to exercise however did influence the expression of genes involved in muscle development. These data suggest that DNMT3A does not have a large role in the function of mature skeletal muscle although a role in muscle development and differentiation is likely.
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Cutadapt removes adapter sequences from high-throughput sequencing reads
Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text
GREAT improves functional interpretation of cis-regulatory regions
Cory Y. McLean, Dave Bristor, Michael Hiller et al. · Nature Biotechnology · 2010 · 5K citations