Journal of Clinical Microbiology · 2020 · 33 citations · 40 references
Life SciencesInfectious DiseasesMicrobiologyGenomicsMedical MicrobiologyMolecular EpidemiologyAntimicrobial Resistance GenomicsBacterial EpidemiologyGastrointestinal InfectionsInfectious DiarrheaPathogen GenomicsPediatric Diarrheal DisordersAntimicrobial Resistance Gene DetectionAntimicrobial Resistance PatternsEnteric Bacterial Pathogen DetectionGenomic Characterization Of PathogensMolecular Diagnosis Of Enteric PathogensPediatric GastroenteritisSalmonella EnteritisSerotype Distribution
Nontyphoidal Salmonella (NTS) are among the most common etiological agents of diarrheal diseases worldwide and have become the most commonly detected bacterial pathogen in children hospitalized with diarrhea in Vietnam. Aiming to better understand the epidemiology, serovar distribution, antimicrobial resistance (AMR), and clinical manifestation of NTS gastroenteritis in Vietnam, we conducted a clinical genomics investigation of NTS isolated from diarrheal children admitted to one of three tertiary hospitals in Ho Chi Minh City.
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Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
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A large genome center's improvements to the Illumina sequencing system
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