Animal Biotechnology · 2020 · 17 citations · 51 references
Myostatin and MyoD family genes play vital roles in myogenesis and this study aimed to identify association of variants in <i>MyoD1</i>, <i>MyoG</i>, <i>MyF5</i>, <i>MyF6</i>, and <i>MSTN</i> genes with meat traits in Santa Inês sheep. A dataset with 44 variants and records of seven meat traits in 192 lambs (pH0, pH24, a*, b*, L*, tenderness assessed by shear force, and water-holding capacity) was used. Single-locus and haplotype association analyses were performed, and the significance threshold was established according to Bonferroni's method. Single-locus analysis revealed two associations at a Bonferroni level, where the variant <i>c.935-185C > G</i> in <i>MyoD1</i> had an additive effect (-4.31 ± 1.08 N) on tenderness, while the variant <i>c.464 + 185G > A</i> in <i>MyoG</i> had an additive effect (-2.86 ± 0.64) on a*. Additionally, the haplotype replacement <i>GT</i>><i>AC</i> in <i>MSTN</i> was associated with pH0 (1.26 ± 0.31), pH24 (1.07 ± 0.27), a* (-1.40 ± 0.51), and tenderness (3.83 ± 1.22 N), while the replacement <i>GT > AG</i> in <i>MyoD1</i> was associated with pH0 (1.43 ± 0.26), pH24 (1.25 ± 0.22), b* (-1.06 ± 0.39), and tenderness (-4.13 ± 1.16 N). Our results have demonstrated that some variants in <i>MyoG</i>, <i>MyF6</i>, <i>MyoD1</i>, and <i>MSTN</i> can be associated with physicochemical meat traits in Santa Inês sheep.
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Haploview: analysis and visualization of LD and haplotype maps
Jeffrey C. Barrett, Ben Fry, Julian Maller et al. · Bioinformatics · 2004 · 14.5K citations · Full text