New Microbes and New Infections · 2020 · 10 citations · 28 references
Life SciencesBiologyMicrobiologyBacteriologyMedical MicrobiologyMicrobial TaxonomyBacterial ClassificationMicrobial PhylogeneticsMicrobial PhylogenomicsMicrobial PhylogenyPhylogenetic ClassificationProkaryotic ClassificationBacterial Species ConceptsBacterial Species DelimitationBacterial Taxonomy DatabasesGenomic Diversity AnalysisGenomic Dna AnalysisMicrobial Species CataloguingPhenotypic IdentificationPolyphasic Taxonomy
Using the culturomics method, two strains were isolated, identified and characterized following the taxonogenomics concept. Megasphaera vaginalis sp. nov. strain Marseille-P4512 (= CSURP4512) and Anaerococcus vaginimassiliensis sp. nov. strain Marseille-P4857 (= CSURP4857) were isolated from the vagina of a French woman. The phylogenic tree, phenotypic criteria and genomic analysis described here clearly show that these two bacteria are different from previously known bacterial species with standing in nomenclature and new members of Firmicutes phylum.
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Trimmomatic: a flexible trimmer for Illumina sequence data
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Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
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