Emerging infectious diseases · 2020 · 17 citations · 41 references
Life SciencesInfectious DiseasesMicrobiologyAntimicrobial ResistanceMicrobial GeneticsPoultry MicrobiologyAntibiotic ResistanceAntibiotic Resistance GeneticsAntimicrobial Resistance GenomicsAntimicrobial Resistance In PoultryPoultry BacteriologyResistance GenesAntimicrobial Resistance PatternsComparative Antimicrobial ResistancePhylogenetic Analysis Of Resistant IsolatesPhylogenetic Comparison Of PathogensPhylogenetic Time TreesPhylogenetics Of ResistancePlasmid Gene Content AnalysisSalmonella Resistance
T he d-Tartrate fermenting, nonparatyphoidal vari- ant of Salmonella enterica serovar Paratyphi B, contemporarily known as variant Java, was first reported in 1935 by De Moor (1). From then until recently, Salmonella Paratyphi B var. Java caused sporadic self-limiting gastrointestinal infections in humans (2-4). Since 1990, reports of human infections increased in Europe (5-10), North America Human infections with this serovar were mainly related to exposure to fish or reptiles A dramatic increase in prevalence in poultry and poultry meat in Europe was reported
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Prokka: rapid prokaryotic genome annotation
Torsten Seemann · Bioinformatics · 2014 · 19.6K citations
Roary: rapid large-scale prokaryote pan genome analysis
Andrew J. Page, Carla Cummins, Martin Hunt et al. · Bioinformatics · 2015 · 5.9K citations · Full text