Concepedia

Enterobacteriaceae predominate in the endophytic microbiome and contribute to the resistome of strawberry

Houpu Zhang, Qianke Zhang, Shiyu Chen, Zihan Zhang, Jiajin Song, Zhengnan Long, Yunlong Yu, Hua Fang

The Science of The Total Environment · 2020 · 53 citations · 48 references

DOI

Concepts

References

48

Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

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Prodigal: prokaryotic gene recognition and translation initiation site identification

Doug Hyatt, Gwo-Liang Chen, Philip LoCascio et al. · BMC Bioinformatics · 2010 · 13.1K citations · Full text

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MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct <i>de Bruijn</i> graph

Dinghua Li, Chi-Man Liu, Ruibang Luo et al. · Bioinformatics · 2015 · 10K citations · Full text

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Improved metagenomic analysis with Kraken 2

Derrick E. Wood, Jennifer Lu, Ben Langmead · Genome biology · 2019 · 7.1K citations · Full text

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NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

Ravi K. Patel, Mukesh Jain · PLoS ONE · 2012 · 3K citations · Full text

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