Nature Communications · 2020 · 21 citations · 30 references
Life SciencesMicrobiologyMolecular BiologyEnzymologyProtein BiochemistryStructural BiologyBacterial Cell StructureEnzyme FunctionMacromolecular AssemblyProtein StructureProteolytic EnzymesStructural EnzymologyActive Site CharacterizationHydrolysisHydrolysis ReactionsPeptidase ActivityPeptidoglycan Cell WallPeptidoglycan StructureProtein Conformational ChangesShape
Assembly of the peptidoglycan is crucial in maintaining viability of bacteria and in defining bacterial cell shapes, both of which are important for existence in the ecological niche that the organism occupies. Here, eight crystal structures for a member of the cell-shape-determining class of Campylobacter jejuni, the peptidoglycan peptidase 3 (Pgp3), are reported. Characterization of the turnover chemistry of Pgp3 reveals cell wall D,D-endopeptidase and D,D-carboxypeptidase activities. Catalysis is accompanied by large conformational changes upon peptidoglycan binding, whereby a loop regulates access to the active site. Furthermore, prior hydrolysis of the crosslinked peptide stem from the saccharide backbone of the peptidoglycan on one side is a pre-requisite for its recognition and turnover by Pgp3. These analyses reveal the noncanonical nature of the transformations at the core of the events that define the morphological shape for C. jejuni as an intestinal pathogen.
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Features and development of <i>Coot</i>
Paul Emsley, Bernhard Lohkamp, W. G. Scott et al. · Acta Crystallographica Section D Biological Crystallography · 2010 · 29.6K citations · Full text