<i>PHENIX</i>: a comprehensive Python-based system for macromolecular structure solution

Paul D. Adams, Pavel V. Afonine, G. Bunkóczi, +15

Acta Crystallographica Section D Biological Crystallography

X-ray CrystallographyStructural BioinformaticsBiomolecular Structure PredictionNatural SciencesMedicine +12

<i>MolProbity</i>: all-atom structure validation for macromolecular crystallography

Vincent B. Chen, W.B. Arendall, Jeffrey J. Headd, +6

Acta Crystallographica Section D Biological Crystallography

X-ray CrystallographyCrystal StructureStructural BioinformaticsBiomolecular Structure PredictionMolecular Biology +14

Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in <i>Phenix</i>

Dorothée Liebschner, Pavel V. Afonine, Matthew L. Baker, +22

Acta Crystallographica Section D Structural Biology

X-ray CrystallographyX-ray SpectroscopyComprehensive Software PackageBiomolecular Structure PredictionBiomolecular Tool +18

MolProbity: More and better reference data for improved all‐atom structure validation

Christopher J. Williams, Jeffrey J. Headd, Nigel W. Moriarty, +15

Protein Science

The Phenix software for automated determination of macromolecular structures

Paul D. Adams, Pavel V. Afonine, G. Bunkóczi, +15

Methods

Biomolecular Structure PredictionStructure DeterminationMolecular BiologyPhenix SoftwareStructural Biology +1

Structures of the Bacterial Ribosome in Classical and Hybrid States of tRNA Binding

J.A. Dunkle, Leyi Wang, Michael B. Feldman, +7

Science

Use of knowledge-based restraints in <i>phenix.refine</i> to improve macromolecular refinement at low resolution

Jeffrey J. Headd, Nathaniel Echols, Pavel V. Afonine, +6

Acta Crystallographica Section D Biological Crystallography

New tools in MolProbity validation: CaBLAM for CryoEM backbone, UnDowser to rethink “waters,” and NGL Viewer to recapture online 3D graphics

Michael G. Prisant, Christopher J. Williams, Vincent B. Chen, +2

Protein Science

Engineering3D ModelingMolprobity Web ServiceComputer-aided DesignMolprobity Validation +20

Graphical tools for macromolecular crystallography in<i>PHENIX</i>

Nathaniel Echols, Ralf W. Grosse‐Kunstleve, Pavel V. Afonine, +10

Journal of Applied Crystallography

X-ray CrystallographyCrystal StructureNatural SciencesMedicinePhenix Suite +11

KING (Kinemage, Next Generation): A versatile interactive molecular and scientific visualization program

Vincent B. Chen, Ian Davis, David Richardson

Protein Science

Visualization ProgramsEngineeringData VisualizationMolecular BiologyMolecular Graphic +15