Concepedia

Soil exposed to silver nanoparticles reveals significant changes in community structure and altered microbial transcriptional profiles

Matthew J. Meier, Annette Dodge, A.D. Samarajeewa, Lee A. Beaudette

Environmental Pollution · 2019 · 46 citations · 42 references

DOI

Concepts

References

42

R: A Language and Environment for Statistical Computing

R Core Team · 2000 · 353K citations · Full text

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

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DADA2: High-resolution sample inference from Illumina amplicon data

Benjamin J. Callahan, Paul J. McMurdie, Michael Rosen et al. · Nature Methods · 2016 · 36.3K citations

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phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

Paul J. McMurdie, Susan Holmes · PLoS ONE · 2013 · 22.5K citations · Full text

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Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Morgan G. I. Langille, Jesse Zaneveld, J. Gregory Caporaso et al. · Nature Biotechnology · 2013 · 9.4K citations · Full text

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