mSystems · 2019 · 167 citations · 28 references
Life SciencesFood ScienceMicrobiologyMetabolomicsMicrobial MetabolismMicrobiome ResearchFermentation MicrobiologyFood FermentationMetabolic Pathways In FermentationMicrobial FermentationMicrobial MetabolomicsMicrobial Succession During FermentationInternal Transcribed Spacer SequencingMetaproteomicsMicrobial Carbohydrate MetabolismMicrobial Ecology Of Fermented FoodsMicrobial Metagenomics Of Fermented FoodsMicrobiome Analysis In FermentationMicrobiome Of Fermented FoodsSpontaneous Fermentation
Fermented foods play important roles in diets worldwide and account for approximately one-third of all foods and beverages consumed. To date, traditional fermentation has used spontaneous fermentation. The microbiome in fermentation has direct impacts on the quality and safety of fermented foods and contributes to the preservation of traditional methods. Here, we used an integrated meta-omics approach to study the microbiome in the fermentation of pu-erh tea, which is a well-known Chinese fermented food with a special flavor and healthful benefits. This study advanced the knowledge of microbiota, metabolites, and enzymes in the fermentation of pu-erh tea. These novel insights shed light onto the complex microbiome in pu-erh fermentation and highlight the power of integrated meta-omics approaches in understanding the microbiome in food fermentation ecosystems.
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Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
Paul Shannon, Andrew Markiel, Owen Ozier et al. · Genome Research · 2003 · 54.3K citations · Full text
Universal sample preparation method for proteome analysis
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KAAS: an automatic genome annotation and pathway reconstruction server
Yuki Moriya, Masumi Itoh, Shujiro Okuda et al. · Nucleic Acids Research · 2007 · 4.3K citations · Full text