Science · 2019 · 210 citations · 47 references
Life SciencesCell BiologyImmunologyCell SignalingImmunoregulationSignal TransductionCell MigrationDendritic Cell BiologyImmune Cell SignalingT Cell ActivationT Cell DevelopmentT Cell DifferentiationDendritic Cell-driven T Cell PrimingImmune Cell HomeostasisImmune Homeostasis RegulationNaive T Cell DifferentiationNaive T Cell HomeostasisT Cell Priming By Dendritic CellsTissue-resident Memory T CellsTransforming Growth Factor Beta Signaling In T Cell Differentiation
Some naïve T cell fates are sealed Tissue-resident memory T (T RM ) cells constitute a subpopulation of memory cells that reside in tissues instead of recirculating. CD8 + epithelial TRM (eT RM ) cells, which occupy the epithelium of sites like the skin, require transforming growth factor–β (TGF-β) for their development. Mani et al. found that α V integrin–expressing dendritic cells, which activate and present TGF-β, are key (see the Perspective by Farber). Surprisingly, this interplay did not occur in the skin or draining lymph nodes during T cell priming. Rather, resting naïve CD8 + T cells interacted with α V integrin–expressing migratory dendritic cells during immune homeostasis, reversibly preconditioning them to become eT RM cells upon activation. A potent cytokine is thus controlled in a context-dependent manner and preimmune T cell repertoires may be less uniform than previously presumed. Science , this issue p. eaav5728 ; see also p. 188
47
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan, Ira M. Hall · Bioinformatics · 2010 · 30.4K citations · Full text
Differential expression analysis for sequence count data
Simon Anders, Wolfgang Huber · Genome biology · 2010 · 16.4K citations · Full text