Cell Reports · 2019 · 86 citations · 48 references
Life SciencesImmunologyMolecular BiologyAdaptive ImmunityGene ExpressionImmunoregulationAdaptive Immune ResponsesImmunological MemoryMicrorna BiologyMicrorna-mediated RegulationT Cell BiologyT Cell DifferentiationCell Cycle DynamicsCell Cycle InhibitionMicrorna Control Of DifferentiationMicrorna Gene RegulationMicrorna In Immune RegulationMicrorna-mediated Immune RegulationRegulatory Gene NetworksVaccination Strategies
Coordinate control of T cell proliferation, survival, and differentiation are essential for host protection from pathogens and cancer. Long-lived memory cells, whose precursors are formed during the initial immunological insult, provide protection from future encounters, and their generation is the goal of many vaccination strategies. microRNAs (miRNAs) are key nodes in regulatory networks that shape effective T cell responses through the fine-tuning of thousands of genes. Here, using compound conditional mutant mice to eliminate miR-15/16 family miRNAs in T cells, we show that miR-15/16 restrict T cell cycle, survival, and memory T cell differentiation. High throughput sequencing of RNA isolated by cross-linking immunoprecipitation of AGO2 combined with gene expression analysis in miR-15/16-deficient T cells indicates that these effects are mediated through the direct inhibition of an extensive network of target genes within pathways critical to cell cycle, survival, and memory.
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The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
STAR: ultrafast universal RNA-seq aligner
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