The Journal of Physical Chemistry B · 2019 · 18 citations · 41 references
Natural SciencesBiochemistryChemistryBiophysical ChemistrySpectroscopyStructural BiologyBiophysical SpectroscopyMolecular SpectroscopyOptical SpectroscopyPhotochemistryUltraviolet-visible SpectroscopyX-ray SpectroscopyExcitationExcited-state AbsorptionMolecular Absorption FeaturesPicosecond SpectroscopySpectral ShiftsSpectral SignaturesX-ray Absorption Near Edge StructureX-ray Chemistry
We use picosecond time-resolved polarized X-ray absorption near-edge structure (XANES) measurements to probe the structure of the long-lived photoexcited state of methylcobalamin (MeCbl) and the cob(II)alamin photoproduct formed following photoexcitation of adenosylcobalamin (AdoCbl, coenzyme B12). For MeCbl, we used 520 nm excitation and a time delay of 100 ps to avoid the formation of cob(II)alamin. We find only small spectral changes in the equatorial and axial directions, which we interpret as arising from small (<∼0.05 Å) changes in both the equatorial and axial distances. This confirms expectations based on prior UV–visible transient absorption measurements and theoretical simulations. We do not find evidence for the significant elongation of the Co–C bond reported by Subramanian [ J. Phys. Chem. Lett. 2018, 9, 1542–1546] following 400 nm excitation. For AdoCbl, we resolve the difference XANES contributions along three unique molecular axes by exciting with both 540 and 365 nm light, demonstrating that the spectral changes are predominantly polarized along the axial direction, consistent with the loss of axial ligation. These data suggest that the microsecond “recombination product” identified by Subramanian et al. is actually the cob(II)alamin photoproduct that is produced following bond homolysis of MeCbl with 400 nm excitation. Our results highlight the pronounced advantage of using polarization-selective transient X-ray absorption for isolating structural dynamics in systems undergoing atomic displacements that are strongly correlated to the exciting optical polarization.
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The X-ray Pump–Probe instrument at the Linac Coherent Light Source
Matthieu Chollet, Roberto Alonso‐Mori, Marco Cammarata et al. · Journal of Synchrotron Radiation · 2015 · 210 citations · Full text
Natural Sciences, Chemistry, Physics +17
Structural basis for gene regulation by a B12-dependent photoreceptor
Marco Jost, Jesús Fernández‐Zapata, María Carmen Polanco et al. · Nature · 2015 · 189 citations · Full text