Frontiers in Genetics · 2019 · 72 citations · 43 references
Life SciencesGeneticsMolecular GeneticsGenomicsHuman GeneticsPrenatal DiagnosisCopy Number Variant AnalysisFetal AnomaliesFetal Anomaly DetectionGenome SequencingPrenatal Genetic DiagnosisVariant DetectionChromosomal Microarray AnalysisFetal Structural Anomaly DetectionLikely Pathogenic Variant InterpretationPrenatal Chromosomal Microarray AnalysisPrenatal Detection Of Copy Number VariantsPrenatal Genome SequencingStructural Chromosomal RearrangementsStructural Fetal Anomalies
Background: Increased nuchal translucency (NT) is an important biomarker associated with increased risk of fetal structural anomalies. It is known to be contributed by a wide range of genetic etiologies from single-nucleotide variants to those affecting millions of base pairs. Currently, prenatal diagnosis is routinely performed by karyotyping and chromosomal microarray analysis (CMA); however, both of them have limited resolution. The diversity of the genetic etiologies warrants an integrated assay such as genome sequencing (GS) for comprehensive detection of genomic variants. Herein, we aim to evaluate the feasibility of applying GS in prenatal diagnosis for the fetuses with increased NT.
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The Sequence Alignment/Map format and SAMtools
Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 67.5K citations · Full text
Fast and accurate short read alignment with Burrows–Wheeler transform
Heng Li, Richard Durbin · Bioinformatics · 2009 · 62.8K citations · Full text