Antimicrobial Agents and Chemotherapy · 2019 · 40 citations · 52 references
Life SciencesMicrobiologyAntimicrobial ResistanceEnvironmental MicrobiologyMicrobial GeneticsAntibiotic ResistanceAntimicrobial Resistance GenomicsBeta-lactam ResistanceEnvironmental Microbial GenomicsEnvironmental Reservoirs Of ResistanceWastewater MicrobiologyAntibiotic Resistance In WastewaterEscherichia ColiExtended-spectrum Beta-lactamase Producing OrganismsExtended-spectrum Beta-lactamase-producing OrganismsExtended-spectrum Beta-lactamasesResistance ClonesSewage SystemsSewage-associated Resistance
Antibiotic resistance in bacteria is an emerging problem globally. Resistant bacteria are found in human and animal microbiota, as well as in the environment. Wastewater receives bacteria from all these sources and thus can provide a measurement of abundance and diversity of antibiotic-resistant bacteria circulating in communities. In this study, water samples were collected from a wastewater pump station in a Norwegian suburban community over a period of 15 months.
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Prokka: rapid prokaryotic genome annotation
Torsten Seemann · Bioinformatics · 2014 · 19.6K citations
MultiQC: summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin et al. · Bioinformatics · 2016 · 10.4K citations · Full text