<scp>metaxa</scp>2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data

Johan Bengtsson‐Palme, Martin Hartmann, K. Martin Eriksson, +4

Molecular Ecology Resources

Bicarbonate and functional CFTR channel are required for proper mucin secretion and link cystic fibrosis with its mucus phenotype

Jenny K. Gustafsson, Anna Ermund, Daniel Ambort, +6

The Journal of Experimental Medicine

InflammationFibrosisMolecular PhysiologyInflammatory Lung DiseaseMucus Phenotype +13

Building pangenome graphs

Erik Garrison, Andrea Guarracino, Simon Heumos, +27

Nature Methods

Pangenome GraphsGeometric Graph TheoryGraph TheoryTopological Graph TheoryGraph Drawing +1

Building pangenome graphs

Erik Garrison, Andrea Guarracino, Simon Heumos, +27

Comparative GenomicsGeneticsMultiple Reference GenomesGenomicsPhylogenetics +19

Rapid evolution of distinct Helicobacter pylori subpopulations in the Americas

Kaisa Thorell, Koji Yahara, Elvire Berthenet, +11

PLoS Genetics

Molecular EpidemiologyComparative GenomicsGeneticsGenomicsPhylogenetic Analysis +14

A GWAS on Helicobacter pylori strains points to genetic variants associated with gastric cancer risk

Elvire Berthenet, Koji Yahara, Kaisa Thorell, +14

BMC Biology

Whole Genome Sequence and Phylogenetic Analysis Show Helicobacter pylori Strains from Latin America Have Followed a Unique Evolution Pathway

Zilia Y. Muñoz-Ramírez, Alfonso Méndez-Tenorio, Ikuko Kato, +8

Frontiers in Cellular and Infection Microbiology

Global analysis of more than 50,000 SARS-CoV-2 genomes reveals epistasis between eight viral genes

Hong-Li Zeng, Vito Dichio, Edwin Rodríguez-Horta, +2

Proceedings of the National Academy of Sciences

<i>In Vivo</i>Analysis of the Viable Microbiota and Helicobacter pylori Transcriptome in Gastric Infection and Early Stages of Carcinogenesis

Kaisa Thorell, Johan Bengtsson‐Palme, Oscar Hsin-Fu Liu, +8

Infection and Immunity

Transcriptome signatures in Helicobacter pylori-infected mucosa identifies acidic mammalian chitinase loss as a corpus atrophy marker

Intawat Nookaew, Kaisa Thorell, Kuntal Worah, +6

BMC Medical Genomics