mSystems · 2019 · 63 citations · 57 references
Life SciencesMarine SciencesMicrobiologyMarine MicrobiologyMicrobial EcologyMicrobial MetabolismAlgal PigmentsMarine GenomicsMarine Microbial MetabolismMarine Microbial PhysiologyMarine Natural ProductsBioactive Compounds From Marine BacteriaBioactive ConstituentsChitin DegradationChitin MetabolismMarine Bacterial MetabolismMarine ChitinasesMarine Microbial Natural ProductsMarine Secondary Metabolites
Infectious bacteria are developing and spreading resistance to conventional treatments at a rapid pace. To provide novel potent antimicrobials, we must develop new bioprospecting strategies. Here, we combined in silico and phenotypic approaches to explore the bioactive potential of the marine bacterial genus Pseudoalteromonas . We found that pigmented strains in particular represent an untapped resource of secondary metabolites and that they also harbor an elaborate chitinolytic machinery. Furthermore, our analysis showed that chitin is likely a preferred substrate for pigmented species, in contrast to nonpigmented species. Potentially, chitin could facilitate the production of new secondary metabolites in pigmented Pseudoalteromonas strains.
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The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
Ross Overbeek, Robert Olson, Gordon D. Pusch et al. · Nucleic Acids Research · 2013 · 4.6K citations · Full text
dbCAN: a web resource for automated carbohydrate-active enzyme annotation
Yanbin Yin, Xizeng Mao, Jincai Yang et al. · Nucleic Acids Research · 2012 · 1.9K citations · Full text