Concepedia

Single-cell transcriptomes of the regenerating intestine reveal a revival stem cell

Arshad Ayyaz, Sandeep Kumar, Bruno Sangiorgi, Bibaswan Ghoshal, Jessica Gosio, Shaida Ouladan, Mardi Fink, Seda Barutcu, Daniel Trcka, Jess Shen,

Nature · 2019 · 586 citations · 44 references

Concepts

Life SciencesBiologyCell BiologyGene ExpressionStem Cell BiologyTranscriptomicsCell-type-specific TranscriptomicsDevelopmental Biology For RegenerationIntestinal DevelopmentSingle-cell TranscriptomicsStem Cell DifferentiationStem Cell PhysiologyDigestive Tract RegenerationEpithelial Stem Cell DifferentiationIntestinal Epithelial DifferentiationIntestinal Epithelial RenewalIntestinal Stem Cell DevelopmentIntestinal Stem Cell Niche EstablishmentIntestinal Stem Cells

References

44

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +17

Visualizing Data using t-SNE

Laurens van der Maaten, Geoffrey E. Hinton · Journal of Machine Learning Research · 2008 · 35.7K citations

Computing, Data Science, Visualization +13

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

Yang Liao, Gordon K. Smyth, Wei Shi · Bioinformatics · 2013 · 29.1K citations · Full text

Life Sciences, Bioinformatics, Biology +14

WGCNA: an R package for weighted correlation network analysis

Peter Langfelder, Steve Horvath · BMC Bioinformatics · 2008 · 29.1K citations · Full text

Life Sciences, Bioinformatics, Systems Biology +15

Integrating single-cell transcriptomic data across different conditions, technologies, and species

Andrew Butler, Paul Hoffman, Peter Smibert et al. · Nature Biotechnology · 2018 · 14.7K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +14