Nature Communications · 2019 · 75 citations · 46 references
MedicineMolecular BiologyOncologyCancer GeneticsMolecular OncologySignal TransductionBladder CancerCancer Cell SignalingCancer GenomicsNuclear Receptor SignalingOncogenic Signaling PathwaysSignal Transduction In CancerActivating Point MutationsNuclear Receptor Signaling PathwaysPoint MutationsPro-tumorigenic SignalingSomatic Genomic AlterationsStructure-function AnalysisStructure-function CorrelationTumor Microenvironment Effects
The upregulation of PPARγ/RXRα transcriptional activity has emerged as a key event in luminal bladder tumors. It renders tumor cell growth PPARγ-dependent and modulates the tumor microenvironment to favor escape from immuno-surveillance. The activation of the pathway has been linked to PPARG gains/amplifications resulting in PPARγ overexpression and to recurrent activating point mutations of RXRα. Here, we report recurrent mutations of PPARγ that also activate the PPARγ/RXRα pathway, conferring PPARγ-dependency and supporting a crucial role of PPARγ in luminal bladder cancer. These mutations are found throughout the protein-including N-terminal, DNA-binding and ligand-binding domains-and most of them enhance protein activity. Structure-function studies of PPARγ variants with mutations in the ligand-binding domain allow identifying structural elements that underpin their gain-of-function. Our study reveals genomic alterations of PPARG that lead to pro-tumorigenic PPARγ/RXRα pathway activation in luminal bladder tumors and may open the way towards alternative options for treatment.
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Helen M. Berman · Nucleic Acids Research · 2000 · 39.8K citations
Scalable molecular dynamics with NAMD
J. C. Phillips, Rosemary Braun, Wei Wang et al. · Journal of Computational Chemistry · 2005 · 17.4K citations · Full text