Assembling a genome for novel nitrogen-fixing bacteria with capabilities for utilization of aromatic hydrocarbons

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

Matthew D. Kearse, Richard Moir, Amy Wilson et al. · Bioinformatics · 2012 · 20.8K citations · Full text

Life Sciences, Bioinformatics, Biology +7

Prokka: rapid prokaryotic genome annotation

Torsten Seemann · Bioinformatics · 2014 · 19.6K citations

Life Sciences, Bioinformatics, Microbiology +13

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

Donovan H. Parks, Michael Imelfort, Connor T. Skennerton et al. · Genome Research · 2015 · 12.8K citations · Full text

Life Sciences, Biology, Microbiology +17

QUAST: quality assessment tool for genome assemblies

Alexey Gurevich, Vladislav Saveliev, Nikolay Vyahhi et al. · Bioinformatics · 2013 · 11.5K citations · Full text

Life Sciences, Bioinformatics, Biology +14

Kraken: ultrafast metagenomic sequence classification using exact alignments

Derrick E. Wood, Steven L. Salzberg · Genome biology · 2014 · 4.9K citations · Full text

Life Sciences, Bioinformatics, Microbiology +17