Bioinformatics · 2018 · 32 citations · 15 references
PAIPline is freely available under https://gitlab.com/rki_bioinformatics/paipline.
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Basic local alignment search tool
Stephen F. Altschul, Warren Gish, Webb Miller et al. · Journal of Molecular Biology · 1990 · 92.8K citations
Fast gapped-read alignment with Bowtie 2
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Long-read Sequencing, Sequence Assembly, Natural Sciences +7
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead, Cole Trapnell, Mihai Pop et al. · Genome biology · 2009 · 22.5K citations · Full text
BLAST+: architecture and applications
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