Basic local alignment search tool

Stephen F. Altschul, Warren Gish, Webb Miller, +2

Journal of Molecular Biology

BioinformaticsEngineeringInformation RetrievalString-searching AlgorithmString Processing +8

<tt>BLAT</tt>—The <tt>BLAST</tt>-Like Alignment Tool

W. James Kent

Genome Research

BiologyLong-read SequencingPhylogeneticsComparative GenomicsGenetics +12

Initial sequencing and comparative analysis of the mouse genome

Scott Schwartz

Nature

SequencingMedicineGeneticsGenome AnalysisGenome Sequencing +3

A Greedy Algorithm for Aligning DNA Sequences

Zheng Zhang, Scott Schwartz, Lukas Wagner, +1

Journal of Computational Biology

GeneticsMolecular BiologyAligning Dna SequencesDna SequencesGenomics +16

NCBI BLAST: a better web interface

Margaret E. Johnson, Irena Zaretskaya, Y. Raytselis, +3

Nucleic Acids Research

EngineeringGeneticsBrowser-based ComputingGenomicsSequence Alignment +23

Database indexing for production MegaBLAST searches

Aleksandr Morgulis, George Coulouris, Yan Raytselis, +3

Bioinformatics

[33] Analysis of compositionally biased regions in sequence databases

John C. Wootton, Scott Federhen

Methods in enzymology on CD-ROM/Methods in enzymology

Sequence DatabasesEngineeringData ScienceData MiningSequence Analysis +5

A Fast and Symmetric DUST Implementation to Mask Low-Complexity DNA Sequences

Aleksandr Morgulis, E. Michael Gertz, Alejandro A. Schäffer, +1

Journal of Computational Biology

GeneticsDna AnalysisMolecular BiologyGenomicsSequence Design +20

WindowMasker: window-based masker for sequenced genomes

Aleksandr Morgulis, E. Michael Gertz, Alejandro A. Schäffer, +1

Bioinformatics

Protein sequence similarity searches using patterns as seeds

Zhao Zhang

Nucleic Acids Research