Concepedia

Arabidopsis Serrate Coordinates Histone Methyltransferases ATXR5/6 and RNA Processing Factor RDR6 to Regulate Transposon Expression

Zeyang Ma, Claudia Castillo-González, Zhiye Wang, Di Sun, Xiaomei Hu, Xuefeng Shen, Magdalena E. Potok, Xiuren Zhang

Developmental Cell · 2018 · 68 citations · 51 references

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51

<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth · Bioinformatics · 2009 · 44.5K citations · Full text

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Ben Langmead, Cole Trapnell, Mihai Pop et al. · Genome biology · 2009 · 23K citations · Full text

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Model-based Analysis of ChIP-Seq (MACS)

Yong Zhang, Tao Liu, Clifford A. Meyer et al. · Genome biology · 2008 · 19.9K citations · Full text

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TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell, Lior Pachter, Steven L. Salzberg · Bioinformatics · 2009 · 12.1K citations · Full text

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Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

Felix Krueger, Simon Andrews · Bioinformatics · 2011 · 5.9K citations · Full text

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