Concepedia

Cnidarian Cell Type Diversity and Regulation Revealed by Whole-Organism Single-Cell RNA-Seq

Arnau Sebé-Pedrós, Baptiste Saudemont, Elad Chomsky, Flora Plessier, Marie-Pierre Mailhé, Justine Renno, Yann Loe-Mie, Aviezer Lifshitz, Zohar Mukamel, Sandrine Schmutz,

Cell · 2018 · 390 citations · 42 references

Concepts

Life SciencesBioinformaticsMolecular BiologyGene ExpressionSingle-cell BioinformaticsTranscriptomicsCell-type Specific Gene ExpressionCell-type-specific TranscriptomicsSingle-cell AnalysisSingle-cell GenomicsSingle-cell Rna Sequencing AnalysisSingle-cell TranscriptomicsCell Type DiversityNormalization Of Single-cell DataSingle-cell Comparative TranscriptomicsSingle-cell Functional GenomicsSingle-cell Rna Sequencing

References

42

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love, Wolfgang Huber, Simon Anders · Genome biology · 2014 · 100.5K citations · Full text

Life Sciences, Bioinformatics, Biostatistics +15

Fast gapped-read alignment with Bowtie 2

Ben Langmead, Steven L. Salzberg · Nature Methods · 2012 · 61.1K citations

Life Sciences, Bioinformatics, Molecular Biology +11

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

Jason D. Buenrostro, Paul G. Giresi, Lisa C. Zaba et al. · Nature Methods · 2013 · 7K citations · Full text

Life Sciences, Genetics, Molecular Biology +17

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

Li Li, Christian J. Stoeckert, David S. Roos · Genome Research · 2003 · 6.1K citations · Full text

Life Sciences, Bioinformatics, Biology +16

Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome

Tom Sexton, Eitan Yaffe, Ephraim Kenigsberg et al. · Cell · 2012 · 2.1K citations · Full text

Life Sciences, Genetics, Molecular Biology +16