Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome

Tom Sexton, Eitan Yaffe, Ephraim Kenigsberg, +6

Cell

ChromatinPattern FormationEngineeringProtein FoldingComputational Biology +7

Single-cell Hi-C reveals cell-to-cell variability in chromosome structure

Takashi Nagano, Yaniv Lubling, Tim J. Stevens, +6

Nature

ChromatinSingle Cell SequencingMedicineGeneticsSingle-cell Biology +5

Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture

Eitan Yaffe, Amos Tanay

Nature Genetics

ChromatinHi-c Contact MapsSystematic BiasesGlobal Chromosomal ArchitectureCytogenetics +10

Cohesin-mediated interactions organize chromosomal domain architecture

Sevil Sofueva, Eitan Yaffe, Wen‐Ching Chan, +7

The EMBO Journal

Profiling the human intestinal environment under physiological conditions

Dari Shalon, Rebecca N. Culver, Jessica A. Grembi, +18

Nature

Comparative Analysis of DNA Replication Timing Reveals Conserved Large-Scale Chromosomal Architecture

Eitan Yaffe, Shlomit Farkash-Amar, Andreas Polten, +3

PLoS Genetics

GeneticsMolecular BiologyGenomicsMolecular EcologyRearrangement Fusion Points +16

Tracking microbial evolution in the human gut using Hi-C reveals extensive horizontal gene transfer, persistence and adaptation

Eitan Yaffe, David A. Relman

Nature Microbiology

DysbiosisMedicineGeneticsGut MicrobiologyOmics +9

Single-cell Hi-C for genome-wide detection of chromatin interactions that occur simultaneously in a single cell

Takashi Nagano, Yaniv Lubling, Eitan Yaffe, +4

Nature Protocols

ChromatinChromatin RemodelingSingle Cell SequencingChromatin InteractionsMedicine +8

MolAxis: Efficient and accurate identification of channels in macromolecules

Eitan Yaffe, Dan Fishelovitch, Haim J. Wolfson, +2

Proteins Structure Function and Bioinformatics

Cooperativity, Specificity, and Evolutionary Stability of Polycomb Targeting in Drosophila

Bernd Schuettengruber, Noa Oded Elkayam, Tom Sexton, +7

Cell Reports

GeneticsGenomic MechanismMolecular GeneticsMetazoan GenomesEpigenetics +17