mSystems · 2017 · 47 citations · 73 references
Life SciencesMicrobiologySystems BiologyGenomicsProteomicsTranscriptomicsGenomic Data IntegrationMicrobial Omics IntegrationMicrobial ProteomicsMicrobial TranscriptomicsOmics IntegrationProteomics Data IntegrationAntisense RnasCoexpression Network AnalysisCoexpression Network ConstructionNext-generation Sequencing Data AnalysisPathogen-host InteractionsProteomic Data AnalysisSystems Biology IntegrationTranscriptomic Data Integration
has become a key model organism for the study of host-pathogen interactions, noncoding RNA regulation, and bacterial adaptation to stress. To study these mechanisms, several genomics, transcriptomics, and proteomics data sets have been produced. We have developed Listeriomics, an interactive web platform to browse and correlate these heterogeneous sources of information. Our website will allow listeriologists and microbiologists to decipher key regulation mechanism by using a systems biology approach.
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BLAST+: architecture and applications
Christiam Camacho, George Coulouris, Vahram Avagyan et al. · BMC Bioinformatics · 2009 · 23.2K citations · Full text
Differential expression analysis for sequence count data
Simon Anders, Wolfgang Huber · Genome biology · 2010 · 16.4K citations · Full text