Nature Medicine · 2016 · 1.2K citations · 29 references
Life SciencesImmunologyPediatricsAutoimmunityMucosal ImmunologyPediatric ImmunologyGut MicrobiomeGut MicrobiotaImmune DevelopmentImmune MaturationNeonatal ImmunityNeonatal ImmunologyEarly-life Gut MicrobiomeEffector T Cell DifferentiationInfant Gut MicrobiotaNeonatal AllergyNeonatal Mucosal Immunity
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Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
Paul Shannon, Andrew Markiel, Owen Ozier et al. · Genome Research · 2003 · 54.3K citations · Full text
Cutadapt removes adapter sequences from high-throughput sequencing reads
Marcel Martin · EMBnet journal · 2011 · 35.8K citations · Full text
Search and clustering orders of magnitude faster than BLAST
R. C. Edgar · Bioinformatics · 2010 · 21.7K citations · Full text
UPARSE: highly accurate OTU sequences from microbial amplicon reads
R. C. Edgar · Nature Methods · 2013 · 17.3K citations