Angewandte Chemie International Edition · 2016 · 26 citations · 16 references
Life SciencesBotanyPlant BiologyMetabolismPlant BiochemistrySpectroscopyMagnetic Resonance SpectroscopyMetabolic LabelingMetabolic Pathway AnalysisMetabolite IdentificationPlant MetabolismStructure-metabolism RelationshipsCarbon DioxideChemical Shift AnalysisMolecular Complexity AssessmentMultidimensional Nmr SpectroscopyNuclear Density Functional TheoryPlant Metabolite ProfilingSecondary MetabolitesStructure - Metabolism Relationship Analysis
Improved signal identification for biological small molecules (BSMs) in a mixture was demonstrated by using multidimensional NMR on samples from (13) C-enriched Rhododendron japonicum (59.5 atom%) cultivated in air containing (13) C-labeled carbon dioxide for 14 weeks. The resonance assignment of 386 carbon atoms and 380 hydrogen atoms in the mixture was achieved. 42 BSMs, including eight that were unlisted in the spectral databases, were identified. Comparisons between the experimental values and the (13) C chemical shift values calculated by density functional theory supported the identifications of unlisted BSMs. Tracing the (13) C/(12) C ratio by multidimensional NMR spectra revealed faster and slower turnover ratios of BSMs involved in central metabolism and those categorized as secondary metabolites, respectively. The identification of BSMs and subsequent flow analysis provided insight into the metabolic systems of the plant.
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HMDB 3.0—The Human Metabolome Database in 2013
David S. Wishart, Timothy Jewison, An Chi Guo et al. · Nucleic Acids Research · 2012 · 2.9K citations · Full text
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Siamak Ravanbakhsh, Philip L.‐F. Liu, Trent C. Bjordahl et al. · PLoS ONE · 2015 · 301 citations · Full text
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