Fast search of thousands of short-read sequencing experiments

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin, Carrie Davis, Felix Schlesinger et al. · Bioinformatics · 2012 · 56.2K citations · Full text

Life Sciences, Bioinformatics, Molecular Biology +17

BLAST+: architecture and applications

Christiam Camacho, George Coulouris, Vahram Avagyan et al. · BMC Bioinformatics · 2009 · 23.2K citations · Full text

Life Sciences, Bioinformatics, Biology +13

Space/time trade-offs in hash coding with allowable errors

Burton H. Bloom · Communications of the ACM · 1970 · 7.5K citations · Full text

Computing, Computer Engineering, Computer Science +11

A fast, lock-free approach for efficient parallel counting of occurrences of <i>k</i> -mers

Guillaume Marçais, Carl Kingsford · Bioinformatics · 2011 · 5.1K citations · Full text

Computing, Bioinformatics, Computer Science +17

The Sequence Read Archive

Rasko Leinonen, Hideaki Sugawara, Martin Shumway · Nucleic Acids Research · 2010 · 3K citations · Full text

Life Sciences, Bioinformatics, Biology +13