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Benchmarking quantitative label-free LC–MS data processing workflows using a complex spiked proteomic standard dataset

Claire Ramus, Agnès Hovasse, Marlène Marcellin, Anne-Marie Hesse, Emmanuelle Mouton‐Barbosa, David Bouyssié, Sebastian Vaca, Christine Carapito, Karima Chaoui, Christophe Bruley,

Journal of Proteomics · 2015 · 86 citations · 34 references

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34

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

Jürgen Cox, Matthias Mann · Nature Biotechnology · 2008 · 15.3K citations

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Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

Jürgen Cox, Nadin Neuhauser, Annette Michalski et al. · Journal of Proteome Research · 2011 · 5.7K citations

Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ

Jürgen Cox, Marco Y. Hein, Christian A. Luber et al. · Molecular & Cellular Proteomics · 2014 · 5.3K citations · Full text

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

Brendan MacLean, Daniela M. Tomazela, Nicholas Shulman et al. · Bioinformatics · 2010 · 4.8K citations · Full text

A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics

Jürgen Cox, Ivan Matić, Maximiliane Hilger et al. · Nature Protocols · 2009 · 779 citations

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