Concepedia

Benchmarking Proteomics Workflows

Benchmarking Proteomics Workflows is a systematic evaluation framework that standardizes the assessment of proteomics data processing methods by comparing their performance against defined metrics and reference datasets to ensure accuracy, reproducibility, and interoperability in protein identification and quantification.

49

Publications

3.6K

Citations

380

Authors

174

Institutions

Publications per year

2017–2026

29

Parents

Publications

49

A multicenter study benchmarks software tools for label-free proteome quantification

Pedro Navarro, Jörg Kuharev, Ludovic Gillet et al. · Nature Biotechnology · 2016 · 385 citations

, , +13

ThermoRawFileParser: Modular, Scalable, and Cross-Platform RAW File Conversion

Niels Hulstaert, Jim Shofstahl, Timo Sachsenberg et al. · Journal of Proteome Research · 2019 · 272 citations · Full text

, , +15

Global internal standard technology for comparative proteomics

Asish Chakraborty, Fred E. Regnier · Journal of Chromatography A · 2002 · 184 citations

, , +13

Comparison of Protein Quantification in a Complex Background by DIA and TMT Workflows with Fixed Instrument Time

Jan Muntel, Joanna Kirkpatrick, Roland Bruderer et al. · Journal of Proteome Research · 2019 · 178 citations

, , +16

Interlaboratory Study Characterizing a Yeast Performance Standard for Benchmarking LC-MS Platform Performance

Amanda G. Paulovich, Dean Billheimer, Amy‐Joan L. Ham et al. · Molecular & Cellular Proteomics · 2009 · 170 citations · Full text

, , +17

1–5 of 49

Authors

380

  1. MR
    Markus Ralser

    The Francis Crick Institute, United Kingdom

    4 publications · 264 citations

    4

    h-index

  2. LM
    Lennart Martens

    Ghent University, Belgium

    3 publications · 364 citations

    3

    h-index

  3. KM
    Karl Mechtler

    Research Institute of Molecular Pathology, Austria

    3 publications · 235 citations

    3

    h-index

  4. SC
    Sarah Cianférani

    Centre National de la Recherche Scientifique, France

    3 publications · 153 citations

    3

    h-index

  5. TS
    Timo Sachsenberg

    University of Tübingen, Germany

    3 publications · 345 citations

    3

    h-index

1–5 of 380

Institutions

174

  1. European Bioinformatics Institute

    Cambridge, United Kingdom

    5 h-index

    8 publications

    1.1K citations

  2. University of Zurich

    Zurich, Switzerland

    5 h-index

    16 publications

    969 citations

  3. Centre National de la Recherche Scientifique

    Paris, France

    4 h-index

    30 publications

    1.7K citations

  4. Institute of Molecular Biotechnology

    Vienna, Austria

    3 h-index

    7 publications

    451 citations

  5. Research Institute of Molecular Pathology

    Vienna, Austria

    3 h-index

    12 publications

    886 citations

  6. University of Tübingen

    Tübingen, Germany

    3 h-index

    7 publications

    469 citations

  7. Wellcome Trust

    London, United Kingdom

    3 h-index

    5 publications

    678 citations

  8. Université de Strasbourg

    Strasbourg, France

    3 h-index

    17 publications

    898 citations

1–8 of 174

Venues

  1. Journal of Proteome Research

    JPR · 11 publications · 928 citations

    10

    h-index

  2. PROTEOMICS

    6 publications · 244 citations

    6

    h-index

  3. bioRxiv (Cold Spring Harbor Laboratory)

    Repository · 4 publications · 121 citations

    4

    h-index

  4. Molecular & Cellular Proteomics

    MCP · 4 publications · 377 citations

    4

    h-index

  5. F1000Research

    3 publications · 156 citations

    3

    h-index

1–5