Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

Weizhong Li, Adam Godzik

Bioinformatics

Cluster ComputingEngineeringMolecular BiologyGenomicsSequence Alignment +21

Diversity of the Human Intestinal Microbial Flora

Paul B. Eckburg, Elisabeth M. Bik, Çharles N. Bernstein, +5

Science

DysbiosisHealthy SubjectsHost-microbe InteractionsImmensely Diverse EcosystemHuman Microbial Flora +14

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

Brian J. Haas, Dirk Gevers, Ashlee M. Earl, +12

Genome Research

Molecular BiologyNucleic Acid Amplification TestGenomicsHigh Throughput SequencingAmplification Products +19

Gut microbiota composition correlates with diet and health in the elderly

Marcus J. Claesson, Ian B. Jeffery, Susana Conde, +23

Nature

NutritionMicrobiota StructureDysbiosisProbioticGut Health +10

Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation

Les Dethlefsen, David A. Relman

Proceedings of the National Academy of Sciences

Intestinal Inflammation Targets Cancer-Inducing Activity of the Microbiota

Janelle C. Arthur, Ernesto Peréz-Chanona, Marcus Mühlbauer, +14

Science

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

Brian D. Muegge, Justin Kuczynski, Dan Knights, +6

Science

<i>Fusobacterium nucleatum</i> infection is prevalent in human colorectal carcinoma

Mauro Castellarin, Jamie Freeman, Lisa Dreolini, +7

Genome Research

Genomic analysis identifies association of <i>Fusobacterium</i> with colorectal carcinoma

Aleksandar D. Kostic, Dirk Gevers, Chandra Sekhar Pedamallu, +15

Genome Research

Colorectal CarcinomaMicrobiota StructureMicrobial DiversityDysbiosisFusobacterium Sequences +12

Composition, variability, and temporal stability of the intestinal microbiota of the elderly

Marcus J. Claesson, Siobhán Cusack, Órla O’Sullivan, +20

Proceedings of the National Academy of Sciences