Concepedia

Whole-genome sequencing to establish relapse or re-infection with Mycobacterium tuberculosis: a retrospective observational study

Josephine M. Bryant, Simon R. Harris, Julian Parkhill, Rodney Dawson, Andreas H. Diacon, Paul D. van Helden, Aziah Ahmad Mahayiddin, Charoen Chuchottaworn, Ian Sanne, Cheryl Louw,

The Lancet Respiratory Medicine · 2013 · 214 citations · 31 references

DOIFull text

Open access

References

31

The Sequence Alignment/Map format and SAMtools

Heng Li, Alec Wysoker, Tim Fennell et al. · Bioinformatics · 2009 · 64.7K citations · Full text

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis · Bioinformatics · 2006 · 15.7K citations · Full text

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

Daniel R. Zerbino, Ewan Birney · Genome Research · 2008 · 9.6K citations · Full text

Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence

Stewart T. Cole, Roland Brosch, Julian Parkhill et al. · Nature · 1998 · 7.8K citations · Full text

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Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology

Judith Kamerbeek, Leo M. Schouls, A H Kolk et al. · Journal of Clinical Microbiology · 1997 · 2.9K citations · Full text

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